PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18806-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 200aa    MW: 22309.6 Da    PI: 5.8695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18806-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-12143754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  +++Y+++L
  TRIUR3_18806-P1  1 MAERRRRKRLNDRLSMLRSIVPKV-----TKMDRTSILGDTIDYVNEL 43
                     58*********************8.....8***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.11E-5148No hitNo description
PROSITE profilePS5088814.97143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-11149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-15163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-15167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAERRRRKRL NDRLSMLRSI VPKVTKMDRT SILGDTIDYV NELTERIKTI EEEIGVTPEE  60
LNLLNTRKNV FIGSSEEMPM RNSTKFVIEK QGDGETRIDL CCATSPGVLI STVSALDVLG  120
LEIEQCVVSC FGDFAMQASC SQEEGRSRVT STDEIKQALF TSAGYGGSCF LTTSVHQVLS  180
WAIRTVVKDW VPISAHMNKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
129ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674520.0AK367452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2057G19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629094.16e-83PREDICTED: transcription factor bHLH93
SwissprotQ9LSL13e-55BH093_ARATH; Transcription factor bHLH93
TrEMBLM8AI941e-147M8AI94_TRIUA; Transcription factor bHLH93
STRINGMLOC_55768.11e-103(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-56beta HLH protein 93